CRAN Package Check Results for Package ChemoSpec

Last updated on 2019-07-24 07:51:08 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.1.9 5.86 111.40 117.26 OK
r-devel-linux-x86_64-debian-gcc 5.1.9 5.15 87.96 93.11 OK
r-devel-linux-x86_64-fedora-clang 5.1.9 82.09 WARN
r-devel-linux-x86_64-fedora-gcc 5.1.9 158.64 WARN
r-devel-windows-ix86+x86_64 5.1.9 9.00 116.00 125.00 OK
r-patched-linux-x86_64 5.1.9 5.51 110.26 115.77 OK
r-patched-solaris-x86 5.1.9 144.30 OK
r-release-linux-x86_64 5.1.9 4.64 110.20 114.84 OK
r-release-windows-ix86+x86_64 5.1.9 10.00 118.00 128.00 OK
r-release-osx-x86_64 5.1.9 ERROR
r-oldrel-windows-ix86+x86_64 5.1.9 11.00 153.00 164.00 OK
r-oldrel-osx-x86_64 5.1.9 OK

Check Details

Version: 5.1.9
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘ChemoSpec.Rmd’ using rmarkdown
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    Trying to automatically install missing LaTeX packages...
    tlmgr install pgf
    tlmgr: package repository http://anorien.csc.warwick.ac.uk/mirrors/CTAN/systems/texlive/tlnet (verified)
    tlmgr install: package already present: pgf
    tlmgr path add
    add_link_dir_dir: /usr/local/share/info/dir exists; not making symlink.
    tlmgr search --file --global '/tikzlibrarytopaths.code.tex'
    ! LaTeX Error: Missing \begin{document}.
    
    Error: processing vignette 'ChemoSpec.Rmd' failed with diagnostics:
    Failed to compile ChemoSpec.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See ChemoSpec.log for more info.
    --- failed re-building ‘ChemoSpec.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘ChemoSpec.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 5.1.9
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘speaq’
Flavor: r-release-osx-x86_64

Version: 5.1.9
Check: examples
Result: ERROR
    Running examples in ‘ChemoSpec-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: clupaSpectra
    > ### Title: Hierarchical Cluster-Based Peak Alignment on a Spectra Object
    > ### Aliases: clupaSpectra
    > ### Keywords: utilities
    >
    > ### ** Examples
    >
    >
    > data(alignMUD)
    >
    > plotSpectra(alignMUD, which = 1:20, lab.pos = 4.5, offset = 0.1,
    + yrange = c(0, 1900), amp = 500, xlim = c(1.5, 1.8),
    + main = "Misaligned NMR Spectra (alignMUD)")
    >
    > aMUD <- clupaSpectra(alignMUD)
    Error in clupaSpectra(alignMUD) :
     You need to install package speaq to use this function
    Execution halted
Flavor: r-release-osx-x86_64