Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.
| Version: | 0.99 |
| Depends: | R (≥ 2.0.0), grid |
| Imports: | genetics |
| Suggests: | rtracklayer, GenomicRanges, chopsticks (≥ 1.18.0), lattice, ggplot2 |
| Published: | 2012-12-05 |
| Author: | Ji-Hyung Shin, Sigal Blay, Nicholas Lewin-Koh, Brad McNeney, Jinko Graham |
| Maintainer: | Brad McNeney <mcneney at sfu.ca> |
| License: | GPL-3 |
| URL: | http://stat.sfu.ca/statgen/research/ldheatmap.html |
| NeedsCompilation: | no |
| Citation: | LDheatmap citation info |
| In views: | Genetics |
| CRAN checks: | LDheatmap results |
| Package source: | LDheatmap_0.99.tar.gz |
| MacOS X binary: | LDheatmap_0.99.tgz |
| Windows binary: | LDheatmap_0.99.zip |
| Reference manual: | LDheatmap.pdf |
| Vignettes: |
LDheatmap LDheatmap adding tracks example |
| News/ChangeLog: | ChangeLog |
| Old sources: | LDheatmap archive |
| Reverse depends: | synbreed |