trio: Testing of SNPs and SNP Interactions in Case-Parent Trio Studies

Testing SNPs and SNP interactions with a genotypic TDT. This package furthermore contains functions for computing pairwise values of LD measures and for identifying LD blocks, as well as functions for setting up matched case pseudo-control genotype data for case-parent trios in order to run trio logic regression, for imputing missing genotypes in trios, for simulating case-parent trios with disease risk dependent on SNP interaction, and for power and sample size calculation in trio data.

Version: 2.0.2
Suggests: survival, haplo.stats, mcbiopi, siggenes, splines, LogicReg (≥ 1.5.3), logicFS (≥ 1.28.1)
Published: 2013-03-01
Author: Holger Schwender, Qing Li, Christoph Neumann, Ingo Ruczinski
Maintainer: Holger Schwender <holger.schw at gmx.de>
License: LGPL-2
NeedsCompilation: no
CRAN checks: trio results

Downloads:

Package source: trio_2.0.2.tar.gz
MacOS X binary: trio_2.0.2.tgz
Windows binary: trio_2.0.2.zip
Reference manual: trio.pdf
Vignettes: Trio Logic Regression and genotypic TDT
Old sources: trio archive